Obsidian Vault

Obsidian Vault

Katherine Eaton's Obsidian Vault

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    Nextstrain citations

    Nextstrain Citations

    1. I want to be able to add and manage citations in Nextstrain and AuspiceAuspice
      Auspice

      Summary




      Auspice is software that performs visualization of [[Phylogenetic
      phylogenies]].




      Configurable Defaults




      Property
      Description
      Example




      color_by
      Colouring
      "country"


      geo_resolution
      Geographic resolution
      "country"


      distance_measure
      Phylogeny x-axis measure
      "div" or "num_date"


      map_triplicate
      Should the map repeat, ...      .
    2. I want to write Nextstrain Narratives in ObsidianObsidian
      Obsidian

      Tasks

      Pending

      table tags
      from ""
      where project=ObsidianObsidian
      Obsidian

      Tasks

      Pending

      table tags
      from ""
      where project=[[Obsidian]] and status!="done"


      Completed

      table tags
      from ""
      where project=[[Obsidian]] and status="done"


      Summary

      Obsidian is software that performs…

      [[HTML]]

      For future reference, the following [[HTML]] tags work:

      <iframe>
      <figure>
      <figcaption>
      <table>
      <div>
      <progress>


      [[div]]

      <div style="page-break-after: always;"></div>


      [[iframe]]

      <iframe id="igraph" scrolling="no" s...       and status!="done"


      Completed

      table tags
      from ""
      where project=ObsidianObsidian
      Obsidian

      Tasks

      Pending

      table tags
      from ""
      where project=[[Obsidian]] and status!="done"


      Completed

      table tags
      from ""
      where project=[[Obsidian]] and status="done"


      Summary

      Obsidian is software that performs…

      [[HTML]]

      For future reference, the following [[HTML]] tags work:

      <iframe>
      <figure>
      <figcaption>
      <table>
      <div>
      <progress>


      [[div]]

      <div style="page-break-after: always;"></div>


      [[iframe]]

      <iframe id="igraph" scrolling="no" s...       and status="done"


      Summary

      Obsidian is software that performs…

      [[HTML]]

      For future reference, the following [[HTML]] tags work:

      <iframe>
      <figure>
      <figcaption>
      <table>
      <div>
      <progress>


      [[div]]

      <div style="page-break-after: always;"></div>


      [[iframe]]

      <iframe id="igraph" scrolling="no" s...      .

    Footnotes

    Write Nextstrain Narratives in ObsidianObsidian
    Obsidian

    Tasks

    Pending

    table tags
    from ""
    where project=ObsidianObsidian
    Obsidian

    Tasks

    Pending

    table tags
    from ""
    where project=[[Obsidian]] and status!="done"


    Completed

    table tags
    from ""
    where project=[[Obsidian]] and status="done"


    Summary

    Obsidian is software that performs…

    [[HTML]]

    For future reference, the following [[HTML]] tags work:

    <iframe>
    <figure>
    <figcaption>
    <table>
    <div>
    <progress>


    [[div]]

    <div style="page-break-after: always;"></div>


    [[iframe]]

    <iframe id="igraph" scrolling="no" s...     and status!="done"


    Completed

    table tags
    from ""
    where project=ObsidianObsidian
    Obsidian

    Tasks

    Pending

    table tags
    from ""
    where project=[[Obsidian]] and status!="done"


    Completed

    table tags
    from ""
    where project=[[Obsidian]] and status="done"


    Summary

    Obsidian is software that performs…

    [[HTML]]

    For future reference, the following [[HTML]] tags work:

    <iframe>
    <figure>
    <figcaption>
    <table>
    <div>
    <progress>


    [[div]]

    <div style="page-break-after: always;"></div>


    [[iframe]]

    <iframe id="igraph" scrolling="no" s...     and status="done"


    Summary

    Obsidian is software that performs…

    [[HTML]]

    For future reference, the following [[HTML]] tags work:

    <iframe>
    <figure>
    <figcaption>
    <table>
    <div>
    <progress>


    [[div]]

    <div style="page-break-after: always;"></div>


    [[iframe]]

    <iframe id="igraph" scrolling="no" s...

    1. Clone auspice repo into obsidian vault (not as submodule!). This will only be for local vault. 
      cd phd/
git clone https://github.com/ktmeaton/plague-phylogeography-projects
cd plague-phylogeography-projects
conda activate plague-phylogeography
HOST="localhost" auspice view --narrativeDir narratives_local