Faria et al. 2018 Genomic Epidemiological Monitoring
| Field | Value |
|---|---|
| Title | Genomic and epidemiological monitoring of yellow fever virus transmission potential |
| Year | 2018 |
| Authors | Faria et al. |
| DOI | https://doi.org/10.1126/science.aat7115 |
| bibtex | faria2018GenomicEpidemiologicalMonitoring |
Summary
- I came across this literature from the PhylogeographyPhylogeography
Phylogeography
Summary
This page explores [[Phylogeography]], particularly the [Geographic Origin] and [[Spread
migration]] of human pathogens. It concerns discussions in the literature, and methods of reconstruction.
Projects
[[Plague Phylodynamics and Phylogeography]]
[[Plague Denmark]]
Methods
[[Mugration]] ([[Discrete
discrete]])
[[Brownian-Motio... BEAST tutorial on Continuous Diffusion.We caution that hypotheses of human-to-human transmission linkage should not be tested directly using Phylogenetic phylogenetic data alone, owing to the large undersampling of [nonhuman primates] infections. -
The authors discuss the analytical and interpretive risks associated with Under-represented undersampling, particular when non-human samples are excluded. Given the multi-host ecology of PlaguePlague
Plague
Disease caused by the bacterium [[Yersinia pestis]].
, there will be strong parallels in these findings. They caution that Phylogeneticphylogenetic data alone is insufficient to test hypotheses such as transmission linkage in this situation.
Figures
Reconstructed Spatiotemporal Diffusion of the Yellow Fever Virus YFV Outbreak outbreak. Phylogeny Branch branches are arranged in space according the locations of phylogeny Nodes nodes (circles). Locations of external nodes are known, whereas those of internal nodes are inferred.
| Fig 4e | Β |
|---|---|
| !faria2018GenomicEpidemiologicalMonitoring_fig4e.jpg | Β |
| Reconstructed migrationSpread Spread Related Notes [[Spread]] of the Yellow Fever Virus (YFV) outbreak. |
Β |
| Faria et al. 2018 | Β |