Integrated Writing
I have multiple different platforms that I write in. I would like to Integrated Writing | Integrate my Writing. |
End Products
Journal Article Manuscript
-
PLOS Pathogens has a LaTeX template that can be downloaded here. pandoc/templates/PLOS/plos_latex_template.pdf plos_latex_template.pdf is example output based on pandoc/templates/PLOS/plos_latex_template.tex plos_latex_template.tex
Tools
ObsidianObsidian
Obsidian
Tasks
Pending
table tags
from ""
where project=ObsidianObsidian
Obsidian
Tasks
Pending
table tags
from ""
where project=[[Obsidian]] and status!="done"
Completed
table tags
from ""
where project=[[Obsidian]] and status="done"
Summary
Obsidian is software that performs…
[[HTML]]
For future reference, the following [[HTML]] tags work:
<iframe>
<figure>
<figcaption>
<table>
<div>
<progress>
[[div]]
<div style="page-break-after: always;"></div>
[[iframe]]
<iframe id="igraph" scrolling="no" s... and status!="done"
Completed
table tags
from ""
where project=ObsidianObsidian
Obsidian
Tasks
Pending
table tags
from ""
where project=[[Obsidian]] and status!="done"
Completed
table tags
from ""
where project=[[Obsidian]] and status="done"
Summary
Obsidian is software that performs…
[[HTML]]
For future reference, the following [[HTML]] tags work:
<iframe>
<figure>
<figcaption>
<table>
<div>
<progress>
[[div]]
<div style="page-break-after: always;"></div>
[[iframe]]
<iframe id="igraph" scrolling="no" s... and status="done"
Summary
Obsidian is software that performs…
[[HTML]]
For future reference, the following [[HTML]] tags work:
<iframe>
<figure>
<figcaption>
<table>
<div>
<progress>
[[div]]
<div style="page-break-after: always;"></div>
[[iframe]]
<iframe id="igraph" scrolling="no" s...
- ObsidianObsidian
Obsidian
Tasks
Pending
table tags
from ""
where project=ObsidianObsidian
Obsidian
Tasks
Pending
table tags
from ""
where project=[[Obsidian]] and status!="done"
Completed
table tags
from ""
where project=[[Obsidian]] and status="done"
Summary
Obsidian is software that performs…
[[HTML]]
For future reference, the following [[HTML]] tags work:
<iframe>
<figure>
<figcaption>
<table>
<div>
<progress>
[[div]]
<div style="page-break-after: always;"></div>
[[iframe]]
<iframe id="igraph" scrolling="no" s... and status!="done"
Completed
table tags
from ""
where project=ObsidianObsidian
Obsidian
Tasks
Pending
table tags
from ""
where project=[[Obsidian]] and status!="done"
Completed
table tags
from ""
where project=[[Obsidian]] and status="done"
Summary
Obsidian is software that performs…
[[HTML]]
For future reference, the following [[HTML]] tags work:
<iframe>
<figure>
<figcaption>
<table>
<div>
<progress>
[[div]]
<div style="page-break-after: always;"></div>
[[iframe]]
<iframe id="igraph" scrolling="no" s... and status="done"
Summary
Obsidian is software that performs…
[[HTML]]
For future reference, the following [[HTML]] tags work:
<iframe>
<figure>
<figcaption>
<table>
<div>
<progress>
[[div]]
<div style="page-break-after: always;"></div>
[[iframe]]
<iframe id="igraph" scrolling="no" s... is my editor and main powerhouse for writing, linking, and thinking. - It uses Markdown.
AuspiceAuspice
Auspice
Summary
Auspice is software that performs visualization of [[Phylogenetic
phylogenies]].
Configurable Defaults
Property
Description
Example
color_by
Colouring
"country"
geo_resolution
Geographic resolution
"country"
distance_measure
Phylogeny x-axis measure
"div" or "num_date"
map_triplicate
Should the map repeat, ...
AuspiceAuspice
Auspice
Summary
Auspice is software that performs visualization of [[Phylogenetic
phylogenies]].
Configurable Defaults
Property
Description
Example
color_by
Colouring
"country"
geo_resolution
Geographic resolution
"country"
distance_measure
Phylogeny x-axis measure
"div" or "num_date"
map_triplicate
Should the map repeat, ... is my data visualization platform.
- It uses Markdown.
Zotero
Zotero is my Reference Manager.
Pandoc
Pandoc is an important Document Conversion tool.
Manubot / Rootstock
Manubot/Rootstock is a manuscript preparation workflow.
Workflow
graph TD;
1-->3;
2-->4;
3-->5;
4-->7;
6-->7;
5-->7;
7-->8;
9-->10;
8-->10;
1[Obsidian];
2[Zotero];
3[Write Markdown]
4[Export Bibliography]
5[Convert Wikilinks]
6[Pandoc]
7[Render Citations to Markdown]
8[Clean Markdown]
9[MVP]
10[Export to HTML]
style 1 fill:#1f77b4,stroke:#333,stroke-width:1px,color:white,fill-opacity:1.0;
style 2 fill:#1f77b4,stroke:#333,stroke-width:1px,color:white,fill-opacity:1.0;
style 6 fill:#1f77b4,stroke:#333,stroke-width:1px,color:white,fill-opacity:1.0;
style 9 fill:#1f77b4,stroke:#333,stroke-width:1px,color:white,fill-opacity:1.0;